Direct base pair detection via correlated chemical probing
Direct base pair detection via correlated chemical probing
Ensemble-MaP determination of complex RNA structural equilibria
Ensemble-MaP determination of complex RNA structural equilibria
Translation initiation mechanisms determined from transcriptome-wide SHAPE
Translation initiation mechanisms determined from transcriptome-wide SHAPE
Structure-mediated translational coupling revealed by transcriptome-wide SHAPE
Structure-mediated translational coupling revealed by transcriptome-wide SHAPE
Hierarchy of RNA functional dynamics
Hierarchy of RNA functional dynamics
Coarse-grained molecular dynamics models probe energetic contributions of topological constraints
Coarse-grained molecular dynamics models probe energetic contributions of topological constraints
Direct base pair detection via correlated chemical probing
Direct base pair detection via correlated chemical probingA.M. Mustoe, manuscript in preparation
Ensemble-MaP determination of complex RNA structural equilibria
Ensemble-MaP determination of complex RNA structural equilibriaA.M. Mustoe, work in preparation
Translation initiation mechanisms determined from transcriptome-wide SHAPE
Translation initiation mechanisms determined from transcriptome-wide SHAPEA.M. Mustoe, S. Busan, G.M. Rice, C.E. Hajdin, B.K. Peterson, V.M. Ruda, N. Kubica, R. Nutiu, J.L. Baryza, and K.M. Weeks. Pervasive regulatory functions of mRNA structure revealed by high-resolution SHAPE probing. Cell, 2018, 173: 181-195.
Structure-mediated translational coupling revealed by transcriptome-wide SHAPE
Structure-mediated translational coupling revealed by transcriptome-wide SHAPEA.M. Mustoe, S. Busan, G.M. Rice, C.E. Hajdin, B.K. Peterson, V.M. Ruda, N. Kubica, R. Nutiu, J.L. Baryza, and K.M. Weeks. Pervasive regulatory functions of mRNA structure revealed by high-resolution SHAPE probing. Cell, 2018, 173: 181-195.
Hierarchy of RNA functional dynamics
Hierarchy of RNA functional dynamicsA. M. Mustoe, C. L. Brooks III, and H. M. Al-Hashimi. Hierarchy of RNA functional dynamics. Annu. Rev. Biochem., 2014, 83: 441-466.
Coarse-grained molecular dynamics models probe energetic contributions of topological constraints
Coarse-grained molecular dynamics models probe energetic contributions of topological constraintsA. M. Mustoe, X. Liu, P. Lin, H. M. Al-Hashimi, C. A. Fierke, and C. L. Brooks III. Noncanonical secondary structure stabilizes human mitochondrial tRNASer(UCN) by reducing the entropic cost of tertiary folding. J. Amer. Chem. Soc., 2015, 137: 3592–3599.A. M. Mustoe, H. M. Al-Hashimi, C. L. Brooks III. Secondary structure encodes a cooperative tertiary folding funnel in the Azoarcus ribozyme. Nucleic Acids Res., 2016, 44:402-412. A. M. Mustoe, C. L. Brooks III, and H. M. Al-Hashimi. Topological constraints are major determinants of tRNA tertiary structure and provide basis for tertiary folding cooperativity. Nucleic Acids Res., 2014, 42: 11792-11804. A. M. Mustoe, H. M. Al-Hashimi, and C. L. Brooks III. Coarse-grained models reveal essential contributions of topological constraints to the conformational free energy of RNA bulges. J. Phys. Chem. B., 2014, 118: 2615–27.
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